1/3: 👏👏 We recommend an excellent tool, Deconer, a powerful reference-based deconvolution method for gene expression data.
#deconvolution #gene_expression
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Posts with #Deconvolution
#Deconvolution
Public posts on X that use #Deconvolution.
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Louise Huuki-Myers@lahuukiExcited to announce that our #deconvolution benchmark has now been published in @GenomeBiology ! 📊 📄 Check out my blog post for a high level overview:Louise Huuki-Myers @lahuukiHey #deconvolution fans! 👀 We’ve got an exciting new pre-print for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬 @LieberInstitute @jhubiostat #scitwitter 📎06141.6K- Louise Huuki-Myers@lahuukiHey #deconvolution fans! 👀 We’ve got an exciting new pre-print for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬 @LieberInstitute @jhubiostat #scitwitter 📎
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Francesca Finotello@Francesca_Fin_📢New preprint alert: #Benchmarking second-generation methods for cell-type #deconvolution of #transcriptomic data A thread 🧵👇 1/1399013.2K- Francesca Finotello@Francesca_Fin_Our extension of immunedeconv for mouse transcriptome #deconvolution is now published in @BioinfoAdv 🎉🐭 👏Kudos to @lorenzo_merotto for leading this effort and to the whole #omnideconv team: @grsturm @alexdietrich_ @itisalist 🙏@uniinnsbruck @FWF_atFrancesca Finotello @Francesca_Fin_New #immunedeconv release available on @github 🎉 - 2 new methods for human-data #deconvolution - Support for mouse data deconvolution (4 new methods + human-to-mouse extension of all methods for human data)05193.8K
- Francesca Finotello@Francesca_Fin_New #immunedeconv release available on @github 🎉 - 2 new methods for human-data #deconvolution - Support for mouse data deconvolution (4 new methods + human-to-mouse extension of all methods for human data)11966
Lana Garmire 🌶@GarmireGroupA labor of love: "Challenges and perspectives in computational deconvolution in genomics data". It discusses #deconvolution challenges across bulk measurement (gene expression and DNA #methylation) and #spatial #transcriptomics. #Bioinformatics
436143- Francesca Finotello@Francesca_Fin_If you are looking for more tools, resources, and insights about next-generation #deconvolution, have a look at: 💻 our website: 📰 our recent benchmarking study:
Francesca Finotello @Francesca_Fin_Need help for investigating tissue complexity from spatial transcriptomic data? Try out our #spacedeconv R package!015576.6K - Francesca Finotello@Francesca_Fin_Need help for investigating tissue complexity from spatial transcriptomic data? Try out our #spacedeconv R package!
24113123.3K - Francesca Finotello@Francesca_Fin_Finally out on @biorxivpreprint 🎉 SimBu: Bias-aware simulation of bulk RNA-seq data with variable cell type composition SimBu is an R package to simulate pseudo-bulk RNA-seq data to benchmark #deconvolution methods @uniinnsbruck @TU_Muenchen11033
Join us on 6/19 at 10am to learn examples of the practical applications of #deconvolution from individual instruments to big clusters. #microscopy
0213- Louise Huuki-Myers@lahuuki@lahuukiTesting these #deconvolution methods was made possible by a really cool multi-assay dataset from consecutive slices of #DLPFC tissue blocks 🧠1. Bulk RNA-seq 🧬 2. #snRNAseq as the reference 🦠 3. #RNAScope serving as a orthogonal measurement of cell type proportions 🔬
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Microscopy Chicago@ChicagoMicroI like to think of #Deconvolution as the #Bacon of Microscopy - it just makes everything better! #Widefield, #Confocal, #Colocalization, you name it! Try @NikonInst NIS-Elements’ Deconvolution Tools for FREE!
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Abberior@AbberiorStandard #deconvolution relies on a-priori assumptions that often produce artifacts. #TRUESHARP image boosting is better: It incorporates measured information from the image to reliably remove noise and background & enhance resolution without falsification. And now it’s available as a free and lean online tool. Check it out!007413- Abberior@AbberiorArtefact-free #deconvolution with abberior’s #TRUESHARP image boosting. Confocal image of the #Drosophila embryo CNS stained for tubulin (🟦STAR ORANGE) and DNA (🟩PicoGreen). TRUESHARP is also available as a free online tool: #fluorescencefriday
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Constantino Carlos Reyes-Aldasoro@C_ReyesAldasoroIf you ever do Color #Deconvolution or Color #Normalization with Hematoxylin and Eosin (H&E) you **have** to read our latest paper via @MDPIOpenAccess #computationalpathology #histopathology @jnkath0517
Anna Vathrakokoili-Pournara@AnnaVathrakoko1Excited to share my first first-author paper, now live in @BioinfoAdv! 📚 We assessed 31 cell-type deconvolution methods across five diverse tissues. 🧬 #deconvolution #transcriptomics #singlecell224738.7K
Varun Mannam@mannam_varunOur new preprint of "Deconvolution in Fluorescence Lifetime imaging microscopy (FLIM)" corrects the non-linear effects (blur and shift of ideal boundary) of convolution on lifetime in FLIM. (SPIE Photonics West conference) #deconvolution #lifetime #FLIM
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Andrea Bassi@AndreaBassi78In this work @DanieleAncora1 finally extends Lucy Richardson #deconvolution to the field of signal recovery from #autocorrelation measurements. @IEEEXplore Transactions on Image Processing
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We are proud to announce that we have officially launched the Expansion Microscopy Studio ( software designed to make life easier for researchers in biology labs across the world. highlights include GPU accelerated #deconvolution (the world's fastest!)
037- Francesca Finotello@Francesca_Fin_📢 Our review on next-generation #deconvolution of the tumor microenvironment has been published on @IRCellMolecBio! 🎉 Kudos to @lorenzo_merotto @mzopog and @ConstantinZackl! @DiSC_uibk @uniinnsbruck
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