#BioImageAnalysis

My "Introduction to #BioImageAnalysis" slides at #NeubiasPasteur23 are available #openaccess 🔬🖥️🔓

Excited to share our new paper using explainable #AI to learn models of complex cell behavior -- including cell competition -- which we can apply to image-based drug screening. Check out the paper here: @G_Charras #bioimageanalysis #imagingthefuture

I'm sometimes* confused when designing #BioImageAnalysis workflows with more than 3 steps. In @napari_imaging I can now visualize why😄 #clesperanto #idfg * only very rarely🤭

#preprint🚨 Overwhelmed when choosing #BioImageAnalysis software? Read our Hitchhiker's Guide🥾 Feedback❤️ly welcome! Big thanks to the team😃@mycroscopy @david_legland @mdoube @SuperResoluSian Ilya Belevich @EJokitalo Martin Schorb @ahklemm @tischitischer

Hi #microscopy and #bioimageanalysis Twitter! I have a favor to ask :) @COBA_NIH, @BioimagingNA , and @RoyalMicroSoc have released a new+improved 2022 Imaging Analysis survey at We especially want your input if you are very new to image analysis! (1/x)

Using @FijiSc to 1) make #cellpose create #3Dsegmentation , 2) create surfaces in @ImarisSoftware! with @ChiguireKun @nKiaru #bioimageanalysis

Your #ImageJ Macro takes ages to analyze your images and your graphics card is idle? Learn how to speed up your #BioImageAnalysis macro and how to use #clij in this chapter I happily wrote together with @happifocus 😃🔬🖥️🚀

Preparing the @cziscience @napari_imaging #plugin kick-off meeting 😃 The ImageJ Macro Recorder taught thousands of biologists programming macros. I hope the [#clesperanto]-Assistant and the Script Editor will teach thousands of biologists #BioImageAnalysis with #Python 🔬🖥️🎓💪

My slides about #BioImageAnalysis with the Help of LLMs I presented today at the #IPHT Jena are #openaccess 🔓 I focused on #biabob (using #chatgpt, #gemini, #mistral and #llama), vision models 🤓 and #blablado 🗣️ Big thanks @beniroquai for hosting me!

We're hiring for our Postdoctoral Training Program in #BioimageAnalysis! Are you a wet lab biologist who wants to move into computational tools and workflows? Do you love collaborating with others & solving puzzles? Do you want a career-specific training program?

Today, I gave a 3h crash course in Quantitative #BioImageAnalysis at @digsbb 🔬🖥️📈 In person, jeey 😃- thanks for having me! And as usual, you find my slides online #OpenAccess #OpenKnowledge

A year ago I didn't think of youtube as an efficient platform for #BioImageAnalysis knowledge exchange. 1234 people proved me wrong 😊

🚨Job alert🚨 If you're interested in interdisciplinary research between Imaging, #BioImageAnalysis and Machine Learning, join us as PhD student in #BioImageDataScience for understanding Human Pathomechanisms via @digsbb @PoLDresden 🔬🖥️🧠🚀

What else do you need to do #BioImageAnalysis? Wrong answers only. 🙃

Excited to announce📢: Our proposal for the Open #BioImageAnalysis consortium has been selected for funding.🥳 This industry&academia joint venture will make sure that all major commercial and #opensource software in the field becomes directly interoperable🔬🖥️🔓 #OpenBIA A 🧵1/5

My seminar slides "How to use #clij for accelerating your science" are online #openscience #BioImageAnalysis Including some homework😉 Thanks again to Michael Gerlach and Silke Tulok for organising and @Medizin_TUD for hosting 🔬💻🚀

I gladly joined the @csbdresden affiliate program recently. 🙏 Thus, YOU can join my #BioImageAnalysis lab @PoLDresden as shared #ELBE postdoc by clicking the link below. 😏 Apply and RT!

The spring call for the #ELBE #postdoc program @csbdresden is open! Thrilled by interdisciplinary research at the interface of #Physics, #ComputerScience, and #Biology? Join us & apply by 2 April, 2021! 💻👩‍🏫🧬@mpicbg @tudresden_de #MPIPKS

Are you curious to try the new Segment Anything Model by @MetaAI on microscopy images? We just added it to our #BioImageAnalysis software #CellACDC. As per all the models, Cell-ACDC will automatically install and download the model and generate the GUI widget for the parameters!

It's a wrap!I had a blast in my first semester teaching @UniLeipzig / @Sca_DS.AI: Microscopy Research Data/Software Management, #BioImageAnalysis, Napari, #LLMs. All materials are online #openaccess: about 800 PPT slides + 100 Jupyter Notebooks 🖥️🔬🔓🎉

1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @ilan_theodoro in my team! #napari #bioimageanalysis #MCP @biohub