#SequencingData

The current landscape and emerging challenges of benchmarking single-cell methods. #SingleCell #SequencingData #Bioinformatics #Genomics #Benchmarking #BriefingsInBioinformatics

Join us for our annual genome #bioinformatics training course, which will provide a guide to the technology, analysis workflows, tools, and resources for next generation #sequencingdata analysis. Hosted at @emblebi Applications close on 17 August 2025

SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection. #SequencingData #DataStorage #DuplicateDetection #Genomics #Bioinformatics @BioinfoAdv

Evaluation of sequencing reads at scale using rdeval. #SequencingData #ReadsSummary #Bioinformatics

Targeted decontamination of sequencing data with CLEAN. #SequencingData #DataDecontamination #NARgenomicsAndBioinformatics #Bioinformatics #Genomics

This past 5th to 9th from February, we had the workshop: Analysis of high throughput sequencing data for plant pathogen identification and analysis, held at Universidad Nacional Toribio Rodríguez de Mendoza de Amazonas, Chachapoyas. #SequencingData #datascience #pathogens

Analysing high-throughput sequencing data in Python with HTSeq 2.0. #HTseq #SequencingData #DataAnalysis #Python #Bioinformatics

1/4 High-throughput sequencing techniques allow for investigating microbial communities in their natural habitats. Besides common #CompositionalData analysis methods, #NetworkAnalysis has gained considerable attention in recent years. #YoungScientistsHMGU

2/4 In addition to analyzing a single association network, identifying network differences between groups (e.g., patients and controls) is often an important analysis step. This is what my #Rpackage #NetCoMi has been created for. ➡️ #YoungScientistsHMGU

3/4 #NetCoMi implements our proposed workflow for constructing, analyzing, and comparing microbial association networks from #SequencingData. It also contains functionality for constructing differential networks as well as sample similarity networks. #YoungScientistsHMGU

Overwhelmed with analysis pipelines for 16S & ITS amplicon #SequencingData? Join @BES_Microbial in Leeds for a 2-day workshop 5-6 Sept to guide you through the whole process in R! ⏰Registration ends TOMORROW (22 Aug)⏰ so hurry and sign up here!

COSAP: Comparative Sequencing Analysis Platform. #SequencingData #AnalysisTools @BMCBioinfo

New: #Postdoc in the Mouse Genomes Project to contribute to the generation, comparative analysis, and interpretation of the genome and transcript #sequencingdata. #EMBLjobs #unix #bioinformatics

Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing. #SequencingData #ErrorCorrection #Bioinformatics @BMCBioinfo

Would you rather have #sequencingdata delivered in a VCF file or publication-ready with pathways etc? #mds #biologists #Bioinformatics

Combining #sequencingdata and #remotesensing to show how bloom phenology influences protistan #functionaltrait succession during the #LabradorSea #springbloom with @Nicolas_stg & @Water_Rox in @FrontMarineSci. #openaccess @GRIL_Limnologie @umtlSciences

Disentangling Cobionts and Contamination in Long-Read Genomic Data using Sequence Composition. #LongRead #SequencingData #ContaminationFiltering #G3 @darwintreelife

ProSynAR: a reference aware read merger. #SequencingData #ReadMerging #ReferenceBased #Bioinformatics

PacRAT: A program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. #SequencingData #LongReads @PacBio #BarcodeVariantMapping #MSA #Bioinformatics

Pseudoalignment facilitates assignment of error-prone Ultima Genomics reads. #ShortRead @UltimaGenomics #SequencingData #Bioinformatics @lpachter @biorxivpreprint

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases. #GeneticDiseases #NGS #SequencingData #GenePrioritizationMethods #ToolsBenchmarking #Bioinformatics @BriefingBioinfo

A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology