Posts with #ReadMapping

#ReadMapping

Public posts on X that use #ReadMapping.

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Abdulrasheed Fawole 💙@bolaji17294mo
Note: The goal is not to dominate the existing tools like BWA-MEM, Bowtie, etc. We are only showing that ANN is also a viable approach for read mapping. #genomics #readmapping #dna #sequencing
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Abdulrasheed Fawole 💙 @bolaji1729
Here is a not-so-official announcement of genivf: a vector search library implemented for viral read mapping. It is a proof-of-concept to show that Approximate Nearest Neighbour (ANN) search can be used for read-read mapping in Genomics.
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Abdulrasheed Fawole 💙@bolaji17294mo
Here is a not-so-official announcement of genivf: a vector search library implemented for viral read mapping. It is a proof-of-concept to show that Approximate Nearest Neighbour (ANN) search can be used for read-read mapping in Genomics.
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Javier Santoyo@jsantoyo1y
Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe. #Pangenome #ReadMapping #PangenomeGraphs @biorxivpreprint
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Javier Santoyo@jsantoyo2y
Efficient Construction and Utilization of k-Ordered FM-indexes with kISS for Ultra-Fast Read Mapping in Large Genomes. #ReadMapping #LargeGenomes #Bioinformatics
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Javier Santoyo@jsantoyo3y
A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology
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Javier Santoyo@jsantoyo3y
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants. #StructuralVariants #LonReads #ReadMapping #Bioinformatics
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Javier Santoyo@jsantoyo3y
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. #Pangenome #ReadMapping #Bioinformatics
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GenomeResearch@ResearchGenome6y
Comparison of #ReadMapping and #VariantCalling Tools for the Analysis of #Plant #NGS #Data #OpenScience #100DaysOfCode #BigData #DataScience #AI #WomenWhoCode #Linux #Python #coding #MachineLearning #serverless #SciComm #STEMeducation #phdchat #edu
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02015
Javier Santoyo@jsantoyo5y
Accelerating long-read analysis on modern CPUs. #ArchitectureOptimization #LongReads #ReadMapping #minimap2 @biorxivpreprint #Bioinformatics
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Javier Santoyo@jsantoyo4y
A survey of mapping algorithms in the long-reads era. #ReadMapping #AlgorithmsSurvey @biorxivpreprint
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Kyle Fletcher@KIGFletcher7y
Everytime I have to check if it's samtools fastq -F4 or -f4 to obtain mapped reads... It just doesn't seem intuitive to me! #Bioinformatics #ReadMapping
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104
Javier Santoyo@jsantoyo6y
ProDerAl: Reference Position Dependent Alignment. #ReadMapping via #Bioinformatics
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Boas Pucker@boas_pucker7y
Extension of our genome-wide investigation of non-canonical splice sites in plants ( to fungi and animals. Paper is now out in @MDPIOpenAccess @Cells_MDPI: #genomics #bioinformatics #RNA #DataScience #AcademicTwitter
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Boas Pucker@boas_pucker7y
@boas_pucker
@MDPIOpenAccess @Cells_MDPI @katharina_frey_ @CeBiTec @biorxivpreprint @biorxiv_genomic @PromPreprint @enasequence @github Coverage changes (splitted alignments) in #RNAseq read mappings served as indication of splice site usage. Datasets are available @unibielefeld: #fungi #animals #opendata #openscience #DataScience
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Boas Pucker@boas_pucker7y
@boas_pucker
@MDPIOpenAccess @Cells_MDPI @katharina_frey_ @CeBiTec @biorxivpreprint @biorxiv_genomic @PromPreprint @enasequence @github @unibielefeld Non-canonical splice sites are often neglected and considered sequencing and/or annotation artifacts, but many are bona fide splice sites. We add support through analysis of variant frequencies at splice site positions. #readmapping #variantcalling #SNV
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113
Javier Santoyo@jsantoyo6y
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes. #ReadMapping #Liftover #ReferenceGenomes @biorxiv_bioinfo
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GenomeResearch@ResearchGenome6y
Comparison of #ReadMapping and #VariantCalling Tools for the Analysis of #Plant #NGS #Data #OpenScience #100DaysOfCode #BigData #DataScience #AI #WomenWhoCode #Linux #Python #coding #MachineLearning #serverless #SciComm #STEMeducation #phdchat #edu
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0115
DNA & RNA research@AndGenomics6y
Comparison of #ReadMapping and #VariantCalling #Tools for the Analysis of #Plant #NGS #Data #OpenScience #SciComm #PubMed #WomenWhoCode #100DaysOfCode #plantsci #researchpaper #Bioinformatics #Genomics #CompBio #benchmarking #Linux #education #science
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01012
Javier Santoyo@jsantoyo6y
Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels. #NGS #ReadMapping #VariantCalling #Benchmarking @BMCBioinfo
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GenomeResearch@ResearchGenome7y
Definitely one of the best alignment tools for sequencing reads of all lengths #genomics #bioinformatics #readmapping
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Stephen Turner @strnr
bwa-mem2 pre-release. Identical alignments. 80% faster.
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Stephen Turner@strnr7y
bwa-mem2 pre-release. Identical alignments. 80% faster.
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