#sequencingdata

Join us for our annual genome #bioinformatics training course, which will provide a guide to the technology, analysis workflows, tools, and resources for next generation #sequencingdata analysis. Hosted at @emblebi Applications close on 17 August 2025

iSeq: An integrated tool to fetch public sequencing data. #SequencingData #DataDownload @biorxivpreprint

Evaluation of sequencing reads at scale using rdeval. #SequencingData #ReadsSummary #Bioinformatics

Next-generation data filtering in the genomics era. #NGS #SequencingData #DataFiltering #Genomics @NatureRevGenet

Direct Inference of Haplotypes from Sequencing Data. #Haplotypes #SequencingData #Bioinformatics #Genomics

The current landscape and emerging challenges of benchmarking single-cell methods. #SingleCell #SequencingData #Bioinformatics #Genomics #Benchmarking #BriefingsInBioinformatics

SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection. #SequencingData #DataStorage #DuplicateDetection #Genomics #Bioinformatics @BioinfoAdv

Targeted decontamination of sequencing data with CLEAN. #SequencingData #DataDecontamination #NARgenomicsAndBioinformatics #Bioinformatics #Genomics

This past 5th to 9th from February, we had the workshop: Analysis of high throughput sequencing data for plant pathogen identification and analysis, held at Universidad Nacional Toribio Rodríguez de Mendoza de Amazonas, Chachapoyas. #SequencingData #datascience #pathogens

COSAP: Comparative Sequencing Analysis Platform. #SequencingData #AnalysisTools @BMCBioinfo

Disentangling Cobionts and Contamination in Long-Read Genomic Data using Sequence Composition. #LongRead #SequencingData #ContaminationFiltering #G3 @darwintreelife

NCGR Virtual #Metagenomics #workshop April 17 - 21, 2023 Learn how to use the UNIX command line, analytical workflows & public tools to independently analyze #SequencingData plus how to visualize & render data using graphing tools.

A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology

WAGS: User-friendly, rapid, containerized pipelines for processing, variant discovery, and annotation of short read whole genome sequencing data. #VariantAnalysis #ShortReads #SequencingData #AnimalGenomics #Bioinformatics #G3

Cellenium—a scalable and interactive visual analytics app for exploring multimodal single-cell data. #SingleCell #SequencingData #InteractiveAnalysis #Bioinformatics

Streamlining remote nanopore data access with slow5curl. @nanopore #SequencingData #DataSharing @biorxivpreprint

IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single cell sequencing data. #PathwayEnrichment #SingleCell #SequencingData #Bioinformatics

3GOLD: optimized Levenshtein distance for clustering third-generation sequencing data. #LongRead #SequencingData #Clustering #Bioinformatics @BMCBioinfo

Combining #sequencingdata and #remotesensing to show how bloom phenology influences protistan #functionaltrait succession during the #LabradorSea #springbloom with @Nicolas_stg & @Water_Rox in @FrontMarineSci. #openaccess @GRIL_Limnologie @umtlSciences

1/4 High-throughput sequencing techniques allow for investigating microbial communities in their natural habitats. Besides common #CompositionalData analysis methods, #NetworkAnalysis has gained considerable attention in recent years. #YoungScientistsHMGU

2/4 In addition to analyzing a single association network, identifying network differences between groups (e.g., patients and controls) is often an important analysis step. This is what my #Rpackage #NetCoMi has been created for. ➡️ #YoungScientistsHMGU

3/4 #NetCoMi implements our proposed workflow for constructing, analyzing, and comparing microbial association networks from #SequencingData. It also contains functionality for constructing differential networks as well as sample similarity networks. #YoungScientistsHMGU