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Posts with #spatialomics

#spatialomics

Public posts on X that use #spatialomics.

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  3. Rong Fan@RongFan8
    🤩🤩🤩 Spatial Omics fans, I am super excited to share our latest manuscript!!! 🤩🤩🤩 #spatialomics #spatialbiology #singlecell Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues
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  4. Hao Yin✓@HaoYin20
    #SpatialOmics STAnalyzer Human-in-the-Loop Multi-agent (Orchestrator/Service Planner/Data Interpretation/Knowledge Integration) framework Work on Visium Xenium From raw counts to hypothesis generation "If the results deviate from biological expectations, the workflow can be seamlessly rolled back to previous decision nodes for re-evaluation" bioRxiv 2026
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  9. Hao Yin✓@HaoYin20
    #SpatialOmics MCMICRO Multiple Choice Microscopy pipeline Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️ Segmentation McQuant▶️single-cell quantitation▶️ Spatial Feature Tables Multimodal (CyCIF CODEX mIHC) registration + HE IMC MIBI @DenisSchapiro @naturemethods 2022
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  11. Hao Yin✓@HaoYin20
    #SpatialOmics #MyocardialInfarction #MolecularCartography 100-gene + #SeqIF 12-marker + #DeepVisualProteomics 4/24/49/96 h postMI🐭 Endocardial vWF mediates Mɸ infiltr Anti-vWF i.v. reduces Mɸ at endocardial, but not epicardial, core or border, zone, but causes infarct wall thinning + worsened cardiac adaptation by 2 wk Cellpose 2 human-in-a-loop for CardioMyocyte segmentation Ankrd1 pixel cluster to demarcate stressed/dying CM Custom analysis pipeline @flowuenne @FloSicklinger @DenisSchapiro @NatureCVR 2025
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  12. CD Genomics@CDGenomics2005
    Bulk m6A is an average over millions of cells. m6A-ARTR-DBiT reads the mark in situ on tissue sections and barcodes cDNA spatially — ~20 µm pixels, regional m6A maps in mouse brain. #m6A #SpatialOmics
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  13. Hao Yin✓@HaoYin20
    #SpatialOmics #Glioblastoma Human GBM contains structured (~50% area) & disorganized regions Spatial Metaprogram A spatial omics (Visium CODEX) framework (NMF captures continuous patterns of gene expression variation)▶️ NDRG1+ hypoxic mesenchymal-like tumor cells as the organizer of 5-layered structure of human GBM Two different states of microvasculature Angiogenic (more prevalent in structured regions) vs Immunomodulatory @MarioSuva @CellCellPress 2024
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  14. EXO – Beyond the Cell@exo_btcell
    Early Career Board Spotlight: Dr. Isabella Piga ✨ Working at University of Cagliari, Dr. Piga applies mass spectrometry imaging and spatial multi-omics to investigate molecular signatures in tissues and advance biomarker discovery. Welcome to EXO! #MassSpectrometry #SpatialOmics
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  16. Janelia Conferences@janeliaconf
    ⏳ Deadline approaching! Finish your application by June 4 to join conversations on how spatial multi-omics can reveal biology in its native tissue context. #SpatialOmics #Bioimaging Apply ➡️ @mengwang939 @JiefuBiol @ASCBiology
    Janelia Conferences @janeliaconf
    📢 Apply by June 4 for Spatial Multi-Omics @HHMIJanelia! Explore new methods to map molecular & cellular organization in intact tissue, from genome architecture to proteins, metabolites & ultrastructure. 🛏️ Lodging + meals covered Apply ➡️ @hhmi_science
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  17. Janelia Conferences@janeliaconf
    📢 Apply by June 4 for Spatial Multi-Omics @HHMIJanelia! Explore new methods to map molecular & cellular organization in intact tissue, from genome architecture to proteins, metabolites & ultrastructure. 🛏️ Lodging + meals covered Apply ➡️ @hhmi_science
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  18. Dee Velazquez@dee_velazquez_
    My first paper is now published in Oxford Bioinformatics! 🎉 Effective data visualization is key in #spatialomics. I’m excited to introduce scatterbar, an #opensource #Rpackage for spatially resolved stacked bar charts! 📊 #dataviz 📄 Paper: 🧵 1/8
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  19. Hao Yin✓@HaoYin20
    Spatial Omics DataBase "a web-based platform providing both rich data resources & a suite of interactive data analytical modules" for >2700 #SpatialOmics Exps 26 spatial omics techniques TencentAI🐧@naturemethods 2023 website:
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  20. Eric and Wendy Schmidt Center@Schmidt_Center
    🧠 New work by @Schmidt_Center postdoctoral fellow @EdJiayu with collaborators at @Columbia and @NYGenome introduces SONIC, a computational tool that finds #SpatialOmics patterns within tissue samples and compares them across tissues, no alignment needed:
    Jiayu Su @EdJiayu
    Our expanded preprint, SONIC, is out! Spatial omics maps thousands of molecular patterns per sample. SONIC detects patterns amid noise and compares them across tissues, even when samples cannot be aligned.
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  21. Jiayu Su@EdJiayu
    Our expanded preprint, SONIC, is out! Spatial omics maps thousands of molecular patterns per sample. SONIC detects patterns amid noise and compares them across tissues, even when samples cannot be aligned.
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  22. Hao Yin✓@HaoYin20
    #SpatialOmics #MultiOMics MaxFuse Integration of spatial & single-cell data across modalities with weakly linked features Fuzzy Smoothing by all-feature nearest-neighbor graph Iterative cycles of coembedding, graph-smoothing & matching scRNAseq - #SpatialProteomics #CODEX: vs Seurat LIGER Harmony BindSC scRNAseq - scATACseq: vs Maestro scJoint scGlue & tri-omic scRNAseq scATACseq CODEX integration @ShuxiaoC @ZhuBokai @GarryPNolan @NancyZh60672287 @ZongmingMa @NatureBiotech 2023
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